Genomics Analysis Pipelines

Ranking methodology

In development — no version effective yet.

Decision archetype: regulated · Scores are category-relative (P-01) and commercial relationships never affect rank (P-04).

Filters

Filters apply to structured facts only. Tools lacking a fact don't match its filter (P-02).

GATKBroad Institute

Open source

Toolkit of analysis tools for variant discovery in high-throughput sequencing data, developed at the Broad Institute.

NextflowSeqera Labs

Open source

Open source workflow system for running reproducible data analysis pipelines.

SnakemakeSnakemake project

Open source

Open source Python-based workflow management system for data analysis.